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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_1DEBF1E8B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 483aa MW: 53016.3 Da PI: 7.3914 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118 | 3.7e-37 | 109 | 168 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvPvG+grr+nk++s Traes_3AS_1DEBF1E8B.1 109 DIIVPCPRCNSMETKFCYFNNYNVSQPRHFCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 168 56789****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-28 | 105 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.267 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-31 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 114 | 150 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MNYAQFCILS VGTIKIMVYQ FELSISCMLN NIFQVVTKLG NDANSNDVMP CVSNKLLNVE 60 ATPFCSKNRE QNDQAISKHG VEVRTGFKSE EIKTGSDGSG QDKVLKKPDI IVPCPRCNSM 120 ETKFCYFNNY NVSQPRHFCR NCQRYWTAGG NIRNVPVGSG RRRNKHASHF RHAMMSCDAN 180 IAAPGDVSNE IHHLALPLLP QVLPGPIKEN KTVKEFGSQV PVCKPMSSIH NIEEQKDTYL 240 VALASGDNSE EQSCPSPATV SGCSENQTPD SAVKKEPSNV LGYYNGITLP HPHGPALVFP 300 WSPGWNSIAV MAAAQCSTEP IQGLENVKHG LPPWAPPLMM AAPGICTPVV PFPMMPPPLW 360 SCIPGWPNGM WSSPCPGNNG PPNKITCSED NSPTLGKHSR ESDLQEENRE NNVQVPKTLR 420 IDDPSEATKS SVRDTLGIKP DEKGLFEPLQ MKVLKNDKTP ESPQALQANP AAFLRSQSFQ 480 ERT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565663.1 | 0.0 | PREDICTED: cyclic dof factor 2-like | ||||
TrEMBL | W5CJ33 | 0.0 | W5CJ33_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_79421.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 2e-53 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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