PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_1DEBF1E8B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 483aa MW: 53016.3 Da PI: 7.3914

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_1DEBF1E8B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.7e-37	109	168	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvPvG+grr+nk++s Traes_3AS_1DEBF1E8B.1 109 DIIVPCPRCNSMETKFCYFNNYNVSQPRHFCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 168 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	105	165	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	112	166	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MNYAQFCILS VGTIKIMVYQ FELSISCMLN NIFQVVTKLG NDANSNDVMP CVSNKLLNVE 60 ATPFCSKNRE QNDQAISKHG VEVRTGFKSE EIKTGSDGSG QDKVLKKPDI IVPCPRCNSM 120 ETKFCYFNNY NVSQPRHFCR NCQRYWTAGG NIRNVPVGSG RRRNKHASHF RHAMMSCDAN 180 IAAPGDVSNE IHHLALPLLP QVLPGPIKEN KTVKEFGSQV PVCKPMSSIH NIEEQKDTYL 240 VALASGDNSE EQSCPSPATV SGCSENQTPD SAVKKEPSNV LGYYNGITLP HPHGPALVFP 300 WSPGWNSIAV MAAAQCSTEP IQGLENVKHG LPPWAPPLMM AAPGICTPVV PFPMMPPPLW 360 SCIPGWPNGM WSSPCPGNNG PPNKITCSED NSPTLGKHSR ESDLQEENRE NNVQVPKTLR 420 IDDPSEATKS SVRDTLGIKP DEKGLFEPLQ MKVLKNDKTP ESPQALQANP AAFLRSQSFQ 480 ERT

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MNYAQFCILS VGTIKIMVYQ FELSISCMLN NIFQVVTKLG NDANSNDVMP CVSNKLLNVE  60
ATPFCSKNRE QNDQAISKHG VEVRTGFKSE EIKTGSDGSG QDKVLKKPDI IVPCPRCNSM  120
ETKFCYFNNY NVSQPRHFCR NCQRYWTAGG NIRNVPVGSG RRRNKHASHF RHAMMSCDAN  180
IAAPGDVSNE IHHLALPLLP QVLPGPIKEN KTVKEFGSQV PVCKPMSSIH NIEEQKDTYL  240
VALASGDNSE EQSCPSPATV SGCSENQTPD SAVKKEPSNV LGYYNGITLP HPHGPALVFP  300
WSPGWNSIAV MAAAQCSTEP IQGLENVKHG LPPWAPPLMM AAPGICTPVV PFPMMPPPLW  360
SCIPGWPNGM WSSPCPGNNG PPNKITCSED NSPTLGKHSR ESDLQEENRE NNVQVPKTLR  420
IDDPSEATKS SVRDTLGIKP DEKGLFEPLQ MKVLKNDKTP ESPQALQANP AAFLRSQSFQ  480
ERT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565663.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	W5CJ33	0.0	W5CJ33_WHEAT; Uncharacterized protein
STRING	MLOC_79421.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-53	cycling DOF factor 3

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]